nextpresso

nextpresso implements a pipeline to perform a complete analysis of RNA-seq data, across four different execution levels:

  1. read quality and contamination checks
  2. read preprocessing through read trimming and/or down-sampling
  3. aligning of reads to the genomic or transcriptomic references and
  4. processing of the obtained alignments to perform the different analysis.

nextpresso has been designed for execution on HPC, scheduled by an SGE system or by a PBS system. Although sequential execution in a single workstation is also allowed.

 

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2017 Sistemas Informáticos de Nueva Generación